Application Meta
jModeltest 2.1
(c) 2011-onwards D. Darriba, G.L. Taboada, R. Doallo and D. Posada,(1) Department of Biochemistry, Genetics and Immunology
University of Vigo, 36310 Vigo, Spain.
(2) Department of Electronics and Systems
University of A Coruna, 15071 A Coruna, Spain.
e-mail: ddarriba@udc.es, dposada@uvigo.es
Fri Apr 17 22:49:22 PDT 2020
Linux 3.10.0-957.12.2.el7.x86_64, arch: amd64, bits: 64, numcores: 24
| Citation: | Darriba D, Taboada GL, Doallo R and Posada D. 2012. "jModelTest 2: more models, new heuristics and parallel computing". Nature Methods 9, 772. |
Settings
Arguments = -tr 24 --set-property log-dir=./ -d infile.phy -s 11 -f -i -g 4 -t ML -AIC -AICc -BIC -DT -S SPR -p -a -wInput Alignment: "infile.phy"
NumTaxa = 585
Length = 29,956
Phyml version = 20130103
Phyml binary = PhyML_3.0_linux64
Candidate models = 88
number of substitution schemes = 11
including models with equal/unequal base frequencies (+F)
including models with/without a proportion of invariable sites (+I)
including models with/without rate variation among sites (+G) (nCat = 4)
Optimized free parameters (K) = Substitution parameters + 1167 branch lengths + topology
Base tree for likelihood calculations = Maximum Likelihood
Tree topology search operation = SPR
Model Optimization Results
| ID | Name | Partition | -lnL | p | fA | fC | fG | fT | ti/tv | R(a) | R(b) | R(c) | R(d) | R(e) | R(f) | p-inv | shape |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | JC | 000000 | 50210.2631 | 1168 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 2 | JC+I | 000000 | 50096.5624 | 1169 | - | - | - | - | - | - | - | - | - | - | - | 0.8930 | - |
| 3 | JC+G | 000000 | 50122.3885 | 1169 | - | - | - | - | - | - | - | - | - | - | - | - | 0.0230 |
| 4 | JC+I+G | 000000 | 50090.8336 | 1170 | - | - | - | - | - | - | - | - | - | - | - | 0.8330 | 1.1540 |
| 5 | F81 | 000000 | 49217.1643 | 1171 | 0.2965 | 0.1818 | 0.1937 | 0.3280 | - | - | - | - | - | - | - | - | - |
| 6 | F81+I | 000000 | 49111.2328 | 1172 | 0.2963 | 0.1821 | 0.1938 | 0.3278 | - | - | - | - | - | - | - | 0.8830 | - |
| 7 | F81+G | 000000 | 49132.1321 | 1172 | 0.2964 | 0.1819 | 0.1937 | 0.3279 | - | - | - | - | - | - | - | - | 0.0240 |
| 8 | F81+I+G | 000000 | 49105.4911 | 1173 | 0.2963 | 0.1821 | 0.1938 | 0.3278 | - | - | - | - | - | - | - | 0.8210 | 1.2330 |
| 9 | K80 | 010010 | 49991.3144 | 1169 | - | - | - | - | 2.4203 | - | - | - | - | - | - | - | - |
| 10 | K80+I | 010010 | 49877.5907 | 1170 | - | - | - | - | 2.4220 | - | - | - | - | - | - | 0.8930 | - |
| 11 | K80+G | 010010 | 49903.4319 | 1170 | - | - | - | - | 2.4209 | - | - | - | - | - | - | - | 0.0230 |
| 12 | K80+I+G | 010010 | 49872.6411 | 1171 | - | - | - | - | 2.4221 | - | - | - | - | - | - | 0.8390 | 1.2540 |
| 13 | HKY | 010010 | 48980.3522 | 1172 | 0.2970 | 0.1811 | 0.1932 | 0.3287 | 2.4275 | - | - | - | - | - | - | - | - |
| 14 | HKY+I | 010010 | 48882.3616 | 1173 | 0.2970 | 0.1816 | 0.1935 | 0.3280 | 2.3742 | - | - | - | - | - | - | 0.8700 | - |
| 15 | HKY+G | 010010 | 48898.5561 | 1173 | 0.2970 | 0.1813 | 0.1933 | 0.3284 | 2.4041 | - | - | - | - | - | - | - | 0.0240 |
| 16 | HKY+I+G | 010010 | 48877.4856 | 1174 | 0.2970 | 0.1816 | 0.1935 | 0.3280 | 2.3718 | - | - | - | - | - | - | 0.8190 | 1.5700 |
| 17 | TrNef | 010020 | 49932.0113 | 1170 | - | - | - | - | - | 1.0000 | 2.5920 | 1.0000 | 1.0000 | 7.1027 | 1.0000 | - | - |
| 18 | TrNef+I | 010020 | 49820.4936 | 1171 | - | - | - | - | - | 1.0000 | 2.5404 | 1.0000 | 1.0000 | 7.2585 | 1.0000 | 0.8890 | - |
| 19 | TrNef+G | 010020 | 49844.5578 | 1171 | - | - | - | - | - | 1.0000 | 2.5663 | 1.0000 | 1.0000 | 7.1788 | 1.0000 | - | 0.0230 |
| 20 | TrNef+I+G | 010020 | 49815.4431 | 1172 | - | - | - | - | - | 1.0000 | 2.5204 | 1.0000 | 1.0000 | 7.2283 | 1.0000 | 0.8380 | 1.3570 |
| 21 | TrN | 010020 | 48919.8649 | 1173 | 0.2991 | 0.1792 | 0.1952 | 0.3266 | - | 1.0000 | 2.7376 | 1.0000 | 1.0000 | 7.6232 | 1.0000 | - | - |
| 22 | TrN+I | 010020 | 48827.0901 | 1174 | 0.2990 | 0.1798 | 0.1953 | 0.3259 | - | 1.0000 | 2.6769 | 1.0000 | 1.0000 | 7.4947 | 1.0000 | 0.8600 | - |
| 23 | TrN+G | 010020 | 48840.1395 | 1174 | 0.2991 | 0.1795 | 0.1953 | 0.3262 | - | 1.0000 | 2.7043 | 1.0000 | 1.0000 | 7.5814 | 1.0000 | - | 0.0240 |
| 24 | TrN+I+G | 010020 | 48822.2934 | 1175 | 0.2990 | 0.1798 | 0.1954 | 0.3258 | - | 1.0000 | 2.6593 | 1.0000 | 1.0000 | 7.4534 | 1.0000 | 0.8000 | 1.4500 |
| 25 | TPM1 | 012210 | 49969.7206 | 1170 | - | - | - | - | - | 1.0000 | 3.3688 | 0.3934 | 0.3934 | 3.3688 | 1.0000 | - | - |
| 26 | TPM1+I | 012210 | 49855.9543 | 1171 | - | - | - | - | - | 1.0000 | 3.3719 | 0.3921 | 0.3921 | 3.3719 | 1.0000 | 0.8930 | - |
| 27 | TPM1+G | 012210 | 49881.8230 | 1171 | - | - | - | - | - | 1.0000 | 3.3683 | 0.3934 | 0.3934 | 3.3683 | 1.0000 | - | 0.0230 |
| 28 | TPM1+I+G | 012210 | 49850.9958 | 1172 | - | - | - | - | - | 1.0000 | 3.3647 | 0.3894 | 0.3894 | 3.3647 | 1.0000 | 0.8390 | 1.2530 |
| 29 | TPM1uf | 012210 | 48953.0208 | 1173 | 0.2973 | 0.1810 | 0.1930 | 0.3288 | - | 1.0000 | 3.3820 | 0.3503 | 0.3503 | 3.3820 | 1.0000 | - | - |
| 30 | TPM1uf+I | 012210 | 48856.8677 | 1174 | 0.2972 | 0.1814 | 0.1933 | 0.3281 | - | 1.0000 | 3.3728 | 0.3599 | 0.3599 | 3.3728 | 1.0000 | 0.8670 | - |
| 31 | TPM1uf+G | 012210 | 48872.0051 | 1174 | 0.2972 | 0.1812 | 0.1931 | 0.3285 | - | 1.0000 | 3.3821 | 0.3543 | 0.3543 | 3.3821 | 1.0000 | - | 0.0240 |
| 32 | TPM1uf+I+G | 012210 | 48851.6517 | 1175 | 0.2972 | 0.1814 | 0.1934 | 0.3281 | - | 1.0000 | 3.3601 | 0.3606 | 0.3606 | 3.3601 | 1.0000 | 0.7990 | 1.2650 |
| 33 | TPM2 | 010212 | 49973.3411 | 1170 | - | - | - | - | - | 0.4392 | 3.3507 | 0.4392 | 1.0000 | 3.3507 | 1.0000 | - | - |
| 34 | TPM2+I | 010212 | 49862.5250 | 1171 | - | - | - | - | - | 0.4632 | 3.4421 | 0.4632 | 1.0000 | 3.4421 | 1.0000 | 0.8890 | - |
| 35 | TPM2+G | 010212 | 49886.4909 | 1171 | - | - | - | - | - | 0.4470 | 3.3723 | 0.4470 | 1.0000 | 3.3723 | 1.0000 | - | 0.0230 |
| 36 | TPM2+I+G | 010212 | 49857.5615 | 1172 | - | - | - | - | - | 0.4625 | 3.4421 | 0.4625 | 1.0000 | 3.4421 | 1.0000 | 0.8340 | 1.2630 |
| 37 | TPM2uf | 010212 | 48951.5749 | 1173 | 0.2979 | 0.1811 | 0.1923 | 0.3286 | - | 0.3506 | 3.1336 | 0.3506 | 1.0000 | 3.1336 | 1.0000 | - | - |
| 38 | TPM2uf+I | 010212 | 48855.0116 | 1174 | 0.2980 | 0.1815 | 0.1925 | 0.3279 | - | 0.3555 | 3.0946 | 0.3555 | 1.0000 | 3.0946 | 1.0000 | 0.8680 | - |
| 39 | TPM2uf+G | 010212 | 48870.3047 | 1174 | 0.2980 | 0.1813 | 0.1924 | 0.3283 | - | 0.3517 | 3.1176 | 0.3517 | 1.0000 | 3.1176 | 1.0000 | - | 0.0240 |
| 40 | TPM2uf+I+G | 010212 | 48849.8052 | 1175 | 0.2981 | 0.1815 | 0.1925 | 0.3279 | - | 0.3548 | 3.0843 | 0.3548 | 1.0000 | 3.0843 | 1.0000 | 0.8110 | 1.4560 |
| 41 | TPM3 | 012012 | 49978.7024 | 1170 | - | - | - | - | - | 0.4825 | 3.7603 | 1.0000 | 0.4825 | 3.7603 | 1.0000 | - | - |
| 42 | TPM3+I | 012012 | 49856.3593 | 1171 | - | - | - | - | - | 0.3848 | 3.3975 | 1.0000 | 0.3848 | 3.3975 | 1.0000 | 0.9050 | - |
| 43 | TPM3+G | 012012 | 49888.2461 | 1171 | - | - | - | - | - | 0.4490 | 3.6482 | 1.0000 | 0.4490 | 3.6482 | 1.0000 | - | 0.0230 |
| 44 | TPM3+I+G | 012012 | 49851.7887 | 1172 | - | - | - | - | - | 0.3758 | 3.3511 | 1.0000 | 0.3758 | 3.3511 | 1.0000 | 0.8820 | 2.1220 |
| 45 | TPM3uf | 012012 | 48976.2632 | 1173 | 0.2970 | 0.1815 | 0.1932 | 0.3283 | - | 0.6555 | 4.5416 | 1.0000 | 0.6555 | 4.5416 | 1.0000 | - | - |
| 46 | TPM3uf+I | 012012 | 48874.9032 | 1174 | 0.2971 | 0.1820 | 0.1935 | 0.3274 | - | 0.5653 | 4.1935 | 1.0000 | 0.5653 | 4.1935 | 1.0000 | 0.8760 | - |
| 47 | TPM3uf+G | 012012 | 48893.1962 | 1174 | 0.2970 | 0.1817 | 0.1933 | 0.3280 | - | 0.6158 | 4.3946 | 1.0000 | 0.6158 | 4.3946 | 1.0000 | - | 0.0240 |
| 48 | TPM3uf+I+G | 012012 | 48869.7799 | 1175 | 0.2971 | 0.1820 | 0.1936 | 0.3273 | - | 0.5560 | 4.1286 | 1.0000 | 0.5560 | 4.1286 | 1.0000 | 0.8240 | 1.4500 |
| 49 | TIM1ef | 012230 | 49910.5173 | 1171 | - | - | - | - | - | 1.0000 | 1.7998 | 0.3933 | 0.3933 | 4.9157 | 1.0000 | - | - |
| 50 | TIM1ef+I | 012230 | 49798.9834 | 1172 | - | - | - | - | - | 1.0000 | 1.7625 | 0.3922 | 0.3922 | 5.0182 | 1.0000 | 0.8890 | - |
| 51 | TIM1ef+G | 012230 | 49823.0623 | 1172 | - | - | - | - | - | 1.0000 | 1.7835 | 0.3927 | 0.3927 | 4.9647 | 1.0000 | - | 0.0230 |
| 52 | TIM1ef+I+G | 012230 | 49794.0278 | 1173 | - | - | - | - | - | 1.0000 | 1.7592 | 0.3922 | 0.3922 | 5.0330 | 1.0000 | 0.8110 | 0.9250 |
| 53 | TIM1 | 012230 | 48892.7586 | 1174 | 0.2993 | 0.1790 | 0.1950 | 0.3267 | - | 1.0000 | 1.8019 | 0.3521 | 0.3521 | 5.0113 | 1.0000 | - | - |
| 54 | TIM1+I | 012230 | 48801.6610 | 1175 | 0.2992 | 0.1796 | 0.1952 | 0.3261 | - | 1.0000 | 1.7914 | 0.3620 | 0.3620 | 5.0137 | 1.0000 | 0.8560 | - |
| 55 | TIM1+G | 012230 | 48813.8249 | 1175 | 0.2992 | 0.1793 | 0.1951 | 0.3264 | - | 1.0000 | 1.7924 | 0.3568 | 0.3568 | 5.0234 | 1.0000 | - | 0.0240 |
| 56 | TIM1+I+G | 012230 | 48796.4385 | 1176 | 0.2992 | 0.1796 | 0.1952 | 0.3260 | - | 1.0000 | 1.7764 | 0.3599 | 0.3599 | 4.9819 | 1.0000 | 0.7670 | 1.0580 |
| 57 | TIM2ef | 010232 | 49914.1304 | 1171 | - | - | - | - | - | 0.4391 | 1.7844 | 0.4391 | 1.0000 | 4.8733 | 1.0000 | - | - |
| 58 | TIM2ef+I | 010232 | 49804.8888 | 1172 | - | - | - | - | - | 0.4574 | 1.7843 | 0.4574 | 1.0000 | 5.1040 | 1.0000 | 0.8850 | - |
| 59 | TIM2ef+G | 010232 | 49827.4992 | 1172 | - | - | - | - | - | 0.4453 | 1.7792 | 0.4453 | 1.0000 | 4.9678 | 1.0000 | - | 0.0230 |
| 60 | TIM2ef+I+G | 010232 | 49799.9309 | 1173 | - | - | - | - | - | 0.4581 | 1.7831 | 0.4581 | 1.0000 | 5.1153 | 1.0000 | 0.8120 | 1.0120 |
| 61 | TIM2 | 010232 | 48891.4721 | 1174 | 0.3000 | 0.1792 | 0.1943 | 0.3266 | - | 0.3546 | 1.6721 | 0.3546 | 1.0000 | 4.6452 | 1.0000 | - | - |
| 62 | TIM2+I | 010232 | 48800.4252 | 1175 | 0.3000 | 0.1798 | 0.1944 | 0.3259 | - | 0.3617 | 1.6612 | 0.3617 | 1.0000 | 4.6315 | 1.0000 | 0.8560 | - |
| 63 | TIM2+G | 010232 | 48812.5564 | 1175 | 0.3000 | 0.1795 | 0.1944 | 0.3262 | - | 0.3578 | 1.6625 | 0.3578 | 1.0000 | 4.6481 | 1.0000 | - | 0.0240 |
| 64 | TIM2+I+G | 010232 | 48795.1465 | 1176 | 0.3000 | 0.1798 | 0.1944 | 0.3258 | - | 0.3598 | 1.6485 | 0.3598 | 1.0000 | 4.6009 | 1.0000 | 0.7740 | 1.1430 |
| 65 | TIM3ef | 012032 | 49919.4177 | 1171 | - | - | - | - | - | 0.4821 | 2.0037 | 1.0000 | 0.4821 | 5.4753 | 1.0000 | - | - |
| 66 | TIM3ef+I | 012032 | 49798.9305 | 1172 | - | - | - | - | - | 0.3811 | 1.7537 | 1.0000 | 0.3811 | 5.0495 | 1.0000 | 0.9000 | - |
| 67 | TIM3ef+G | 012032 | 49829.1155 | 1172 | - | - | - | - | - | 0.4449 | 1.9147 | 1.0000 | 0.4449 | 5.3467 | 1.0000 | - | 0.0230 |
| 68 | TIM3ef+I+G | 012032 | 49793.9582 | 1173 | - | - | - | - | - | 0.3794 | 1.7450 | 1.0000 | 0.3794 | 5.0531 | 1.0000 | 0.8440 | 1.1150 |
| 69 | TIM3 | 012032 | 48915.7992 | 1174 | 0.2991 | 0.1795 | 0.1952 | 0.3263 | - | 0.6555 | 2.4002 | 1.0000 | 0.6555 | 6.6746 | 1.0000 | - | - |
| 70 | TIM3+I | 012032 | 48820.2748 | 1175 | 0.2991 | 0.1803 | 0.1954 | 0.3253 | - | 0.5777 | 2.2319 | 1.0000 | 0.5777 | 6.2378 | 1.0000 | 0.8660 | - |
| 71 | TIM3+G | 012032 | 48834.9378 | 1175 | 0.2991 | 0.1798 | 0.1953 | 0.3258 | - | 0.6197 | 2.3197 | 1.0000 | 0.6197 | 6.4996 | 1.0000 | - | 0.0240 |
| 72 | TIM3+I+G | 012032 | 48816.2438 | 1176 | 0.2990 | 0.1804 | 0.1954 | 0.3253 | - | 0.5670 | 2.1993 | 1.0000 | 0.5670 | 6.1161 | 1.0000 | 0.8110 | 1.4770 |
| 73 | TVMef | 012314 | 49948.9257 | 1172 | - | - | - | - | - | 0.3273 | 2.2766 | 0.2765 | 0.2474 | 2.2766 | 1.0000 | - | - |
| 74 | TVMef+I | 012314 | 49828.9394 | 1173 | - | - | - | - | - | 0.2820 | 2.1176 | 0.2889 | 0.1933 | 2.1176 | 1.0000 | 0.9010 | - |
| 75 | TVMef+G | 012314 | 49859.0642 | 1173 | - | - | - | - | - | 0.3123 | 2.2285 | 0.2797 | 0.2286 | 2.2285 | 1.0000 | - | 0.0230 |
| 76 | TVMef+I+G | 012314 | 49823.6593 | 1174 | - | - | - | - | - | 0.2738 | 2.0660 | 0.2856 | 0.1867 | 2.0660 | 1.0000 | 0.8700 | 1.7000 |
| 77 | TVM | 012314 | 48934.2062 | 1175 | 0.2979 | 0.1815 | 0.1923 | 0.3283 | - | 0.3538 | 2.3635 | 0.2154 | 0.3218 | 2.3635 | 1.0000 | - | - |
| 78 | TVM+I | 012314 | 48834.3971 | 1176 | 0.2980 | 0.1820 | 0.1926 | 0.3274 | - | 0.3112 | 2.2180 | 0.2190 | 0.2806 | 2.2180 | 1.0000 | 0.8730 | - |
| 79 | TVM+G | 012314 | 48851.6599 | 1176 | 0.2980 | 0.1817 | 0.1924 | 0.3279 | - | 0.3343 | 2.3029 | 0.2166 | 0.3042 | 2.3029 | 1.0000 | - | 0.0240 |
| 80 | TVM+I+G | 012314 | 48829.0650 | 1177 | 0.2981 | 0.1820 | 0.1926 | 0.3273 | - | 0.3040 | 2.1700 | 0.2158 | 0.2740 | 2.1700 | 1.0000 | 0.8190 | 1.4250 |
| 81 | SYM | 012345 | 49889.7210 | 1173 | - | - | - | - | - | 0.3275 | 1.2154 | 0.2769 | 0.2474 | 3.3181 | 1.0000 | - | - |
| 82 | SYM+I | 012345 | 49770.6194 | 1174 | - | - | - | - | - | 0.2743 | 1.0834 | 0.2846 | 0.1912 | 3.1280 | 1.0000 | 0.8980 | - |
| 83 | SYM+G | 012345 | 49799.7927 | 1174 | - | - | - | - | - | 0.3081 | 1.1683 | 0.2791 | 0.2262 | 3.2602 | 1.0000 | - | 0.0230 |
| 84 | SYM+I+G | 012345 | 49765.7639 | 1175 | - | - | - | - | - | 0.2725 | 1.0741 | 0.2837 | 0.1897 | 3.1156 | 1.0000 | 0.8240 | 0.8840 |
| 85 | GTR | 012345 | 48874.3079 | 1176 | 0.3000 | 0.1795 | 0.1943 | 0.3262 | - | 0.3550 | 1.2563 | 0.2164 | 0.3231 | 3.4766 | 1.0000 | - | - |
| 86 | GTR+I | 012345 | 48780.6471 | 1177 | 0.3000 | 0.1803 | 0.1945 | 0.3253 | - | 0.3220 | 1.1957 | 0.2215 | 0.2877 | 3.3169 | 1.0000 | 0.8620 | - |
| 87 | GTR+G | 012345 | 48794.2555 | 1177 | 0.3000 | 0.1799 | 0.1944 | 0.3258 | - | 0.3396 | 1.2294 | 0.2186 | 0.3069 | 3.4185 | 1.0000 | - | 0.0240 |
| 88 | GTR+I+G | 012345 | 48775.3282 | 1178 | 0.2999 | 0.1803 | 0.1945 | 0.3253 | - | 0.3197 | 1.1906 | 0.2209 | 0.2859 | 3.3016 | 1.0000 | 0.8070 | 1.5270 |
There are 71 different topologies. The following table shows the models supporting each topology and the rank according to each Information Criterion, as well as Robinson-Foulds and Euclidean distances with the tree of the best-fit model.
| ID | Models | Topology | AIC | BIC | AICc | DT | |
|---|---|---|---|---|---|---|---|
| 0 |
GTR+I+G
|
RANK | 0 | 0 | 0 | 0 | |
| Weight | 0.9869 | 0.5411 | 0.9857 | 0.0236 | |||
| RF | 0 | 0 | 0 | 0 | |||
| AVG Distance | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 1 |
TIM3+I+G
|
RANK | 1 | 1 | 1 | 1 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0131 | |||
| RF | 8 | 8 | 8 | 8 | |||
| AVG Distance | 1.4341e-03 | 1.4341e-03 | 1.4341e-03 | 1.4341e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 2 |
TPM1uf+I+G
|
RANK | 2 | 2 | 2 | 2 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 10 | 10 | 10 | 10 | |||
| AVG Distance | 2.0581e-03 | 2.0581e-03 | 2.0581e-03 | 2.0581e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 3 |
TPM2uf+I+G
|
RANK | 3 | 3 | 3 | 3 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0203 | |||
| RF | 10 | 10 | 10 | 10 | |||
| AVG Distance | 2.9688e-04 | 2.9688e-04 | 2.9688e-04 | 2.9688e-04 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 4 |
TIM2+I+G
|
RANK | 4 | 4 | 4 | 4 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0139 | |||
| RF | 14 | 14 | 14 | 14 | |||
| AVG Distance | 1.2321e-03 | 1.2321e-03 | 1.2321e-03 | 1.2321e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 5 |
TIM1+I+G
|
RANK | 5 | 5 | 5 | 5 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0143 | |||
| RF | 16 | 16 | 16 | 16 | |||
| AVG Distance | 1.1701e-03 | 1.1701e-03 | 1.1701e-03 | 1.1701e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 6 |
TVM+I+G
|
RANK | 6 | 6 | 6 | 6 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0131 | |||
| RF | 20 | 20 | 20 | 20 | |||
| AVG Distance | 1.4648e-03 | 1.4648e-03 | 1.4648e-03 | 1.4648e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 7 |
TPM3uf+I+G
|
RANK | 7 | 7 | 7 | 7 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0139 | |||
| RF | 26 | 26 | 26 | 26 | |||
| AVG Distance | 1.2187e-03 | 1.2187e-03 | 1.2187e-03 | 1.2187e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 8 |
F81+I+G
|
RANK | 8 | 8 | 8 | 8 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0113 | |||
| RF | 28 | 28 | 28 | 28 | |||
| AVG Distance | 1.9115e-03 | 1.9115e-03 | 1.9115e-03 | 1.9115e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 9 |
TrN+I+G
|
RANK | 9 | 9 | 9 | 9 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0112 | |||
| RF | 32 | 32 | 32 | 32 | |||
| AVG Distance | 1.9278e-03 | 1.9278e-03 | 1.9278e-03 | 1.9278e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 10 |
HKY+I+G
|
RANK | 10 | 10 | 10 | 10 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0124 | |||
| RF | 50 | 50 | 50 | 50 | |||
| AVG Distance | 1.5927e-03 | 1.5927e-03 | 1.5927e-03 | 1.5927e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 11 |
TPM1+I+G
|
RANK | 11 | 11 | 11 | 11 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0106 | |||
| RF | 476 | 476 | 476 | 476 | |||
| AVG Distance | 2.0990e-03 | 2.0990e-03 | 2.0990e-03 | 2.0990e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 12 |
TPM3+I+G
|
RANK | 12 | 12 | 12 | 12 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 478 | 478 | 478 | 478 | |||
| AVG Distance | 2.0687e-03 | 2.0687e-03 | 2.0687e-03 | 2.0687e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 13 |
TVMef+I+G
|
RANK | 13 | 13 | 13 | 13 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 482 | 482 | 482 | 482 | |||
| AVG Distance | 2.0617e-03 | 2.0617e-03 | 2.0617e-03 | 2.0617e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 14 |
JC+I+G
|
RANK | 14 | 14 | 14 | 14 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 488 | 488 | 488 | 488 | |||
| AVG Distance | 2.0489e-03 | 2.0489e-03 | 2.0489e-03 | 2.0489e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 15 |
TPM2+I+G
|
RANK | 15 | 15 | 15 | 15 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0106 | |||
| RF | 492 | 492 | 492 | 492 | |||
| AVG Distance | 2.0864e-03 | 2.0864e-03 | 2.0864e-03 | 2.0864e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 16 |
K80+I+G
|
RANK | 16 | 16 | 16 | 16 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 494 | 494 | 494 | 494 | |||
| AVG Distance | 2.0684e-03 | 2.0684e-03 | 2.0684e-03 | 2.0684e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 17 |
TIM2ef+I+G
|
RANK | 17 | 17 | 17 | 17 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 500 | 500 | 500 | 500 | |||
| AVG Distance | 2.0344e-03 | 2.0344e-03 | 2.0344e-03 | 2.0344e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 18 |
TrNef+I+G
|
RANK | 18 | 18 | 18 | 18 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 502 | 502 | 502 | 502 | |||
| AVG Distance | 2.0700e-03 | 2.0700e-03 | 2.0700e-03 | 2.0700e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 19 |
SYM+I+G
|
RANK | 19 | 19 | 19 | 19 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 502 | 502 | 502 | 502 | |||
| AVG Distance | 2.0418e-03 | 2.0418e-03 | 2.0418e-03 | 2.0418e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 20 |
TIM3ef+I+G
|
RANK | 20 | 20 | 20 | 20 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 506 | 506 | 506 | 506 | |||
| AVG Distance | 2.0445e-03 | 2.0445e-03 | 2.0445e-03 | 2.0445e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 21 |
TIM1ef+I+G
|
RANK | 21 | 21 | 21 | 21 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 508 | 508 | 508 | 508 | |||
| AVG Distance | 2.0577e-03 | 2.0577e-03 | 2.0577e-03 | 2.0577e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 22 |
TIM2+I
|
RANK | 22 | 22 | 22 | 22 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 772 | 772 | 772 | 772 | |||
| AVG Distance | 2.0686e-03 | 2.0686e-03 | 2.0686e-03 | 2.0686e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 23 |
GTR+I
|
RANK | 23 | 23 | 23 | 23 | |
| Weight | 0.0131 | 0.4588 | 0.0143 | 0.0200 | |||
| RF | 776 | 776 | 776 | 776 | |||
| AVG Distance | 2.0638e-03 | 2.0638e-03 | 2.0638e-03 | 2.0638e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 24 |
TIM1+I
|
RANK | 24 | 24 | 24 | 24 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0110 | |||
| RF | 778 | 778 | 778 | 778 | |||
| AVG Distance | 2.0441e-03 | 2.0441e-03 | 2.0441e-03 | 2.0441e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 25 |
F81+I
|
RANK | 25 | 25 | 25 | 25 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 780 | 780 | 780 | 780 | |||
| AVG Distance | 2.0664e-03 | 2.0664e-03 | 2.0664e-03 | 2.0664e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 26 |
K80+I
|
RANK | 26 | 26 | 26 | 26 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 780 | 780 | 780 | 780 | |||
| AVG Distance | 2.0896e-03 | 2.0896e-03 | 2.0896e-03 | 2.0896e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 27 |
TPM2+I
|
RANK | 27 | 27 | 27 | 27 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 782 | 782 | 782 | 782 | |||
| AVG Distance | 2.0978e-03 | 2.0978e-03 | 2.0978e-03 | 2.0978e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 28 |
TIM3ef+I
|
RANK | 28 | 28 | 28 | 28 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 784 | 784 | 784 | 784 | |||
| AVG Distance | 2.0883e-03 | 2.0883e-03 | 2.0883e-03 | 2.0883e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 29 |
TrN+I
|
RANK | 29 | 29 | 29 | 29 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 786 | 786 | 786 | 786 | |||
| AVG Distance | 2.0789e-03 | 2.0789e-03 | 2.0789e-03 | 2.0789e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 30 |
TPM1+I
|
RANK | 30 | 30 | 30 | 30 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 786 | 786 | 786 | 786 | |||
| AVG Distance | 2.0826e-03 | 2.0826e-03 | 2.0826e-03 | 2.0826e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 31 |
TIM3+I
|
RANK | 31 | 31 | 31 | 31 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0110 | |||
| RF | 786 | 786 | 786 | 786 | |||
| AVG Distance | 2.0371e-03 | 2.0371e-03 | 2.0371e-03 | 2.0371e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 32 |
TrNef+I
|
RANK | 32 | 32 | 32 | 32 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 792 | 792 | 792 | 792 | |||
| AVG Distance | 2.0937e-03 | 2.0937e-03 | 2.0937e-03 | 2.0937e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 33 |
TVM+I
|
RANK | 33 | 33 | 33 | 33 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 792 | 792 | 792 | 792 | |||
| AVG Distance | 2.0394e-03 | 2.0394e-03 | 2.0394e-03 | 2.0394e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 34 |
TPM1uf+I
|
RANK | 34 | 34 | 34 | 34 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 794 | 794 | 794 | 794 | |||
| AVG Distance | 2.0961e-03 | 2.0961e-03 | 2.0961e-03 | 2.0961e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 35 |
TPM3+I
|
RANK | 35 | 35 | 35 | 35 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0106 | |||
| RF | 794 | 794 | 794 | 794 | |||
| AVG Distance | 2.1159e-03 | 2.1159e-03 | 2.1159e-03 | 2.1159e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 36 |
HKY+I
|
RANK | 36 | 36 | 36 | 36 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 800 | 800 | 800 | 800 | |||
| AVG Distance | 2.0581e-03 | 2.0581e-03 | 2.0581e-03 | 2.0581e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 37 |
TIM1ef+I
|
RANK | 37 | 37 | 37 | 37 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0106 | |||
| RF | 800 | 800 | 800 | 800 | |||
| AVG Distance | 2.1541e-03 | 2.1541e-03 | 2.1541e-03 | 2.1541e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 38 |
TIM2ef+I
|
RANK | 38 | 38 | 38 | 38 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 800 | 800 | 800 | 800 | |||
| AVG Distance | 2.0657e-03 | 2.0657e-03 | 2.0657e-03 | 2.0657e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 39 |
JC+I
|
RANK | 39 | 39 | 39 | 39 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 802 | 802 | 802 | 802 | |||
| AVG Distance | 2.0711e-03 | 2.0711e-03 | 2.0711e-03 | 2.0711e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 40 |
TPM3uf+I
|
RANK | 40 | 40 | 40 | 40 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 802 | 802 | 802 | 802 | |||
| AVG Distance | 2.0614e-03 | 2.0614e-03 | 2.0614e-03 | 2.0614e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 41 |
TVMef+I
|
RANK | 41 | 41 | 41 | 41 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0106 | |||
| RF | 802 | 802 | 802 | 802 | |||
| AVG Distance | 2.1546e-03 | 2.1546e-03 | 2.1546e-03 | 2.1546e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 42 |
SYM+I
|
RANK | 42 | 42 | 42 | 42 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 802 | 802 | 802 | 802 | |||
| AVG Distance | 2.0719e-03 | 2.0719e-03 | 2.0719e-03 | 2.0719e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 43 |
TPM2uf+I
|
RANK | 43 | 43 | 43 | 43 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0112 | |||
| RF | 806 | 806 | 806 | 806 | |||
| AVG Distance | 2.0170e-03 | 2.0170e-03 | 2.0170e-03 | 2.0170e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 44 |
TPM1
|
RANK | 44 | 44 | 44 | 44 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 858 | 858 | 858 | 858 | |||
| AVG Distance | 2.0470e-03 | 2.0470e-03 | 2.0470e-03 | 2.0470e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 45 |
TPM2 TPM3
|
RANK | 45 | 45 | 45 | 45 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0216 | |||
| RF | 858 | 858 | 858 | 858 | |||
| AVG Distance | 2.0578e-03 | 2.0578e-03 | 2.0578e-03 | 2.0578e-03 | |||
| Distance VAR | 1.7230e-10 | 1.7230e-10 | 1.7230e-10 | 1.7230e-10 | |||
| 46 |
TIM1ef TIM2ef TIM3ef TVMef SYM
|
RANK | 46 | 46 | 46 | 46 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0541 | |||
| RF | 858 | 858 | 858 | 858 | |||
| AVG Distance | 2.0548e-03 | 2.0548e-03 | 2.0548e-03 | 2.0548e-03 | |||
| Distance VAR | 7.2806e-11 | 7.2806e-11 | 7.2806e-11 | 7.2806e-11 | |||
| 47 |
TPM1+G
|
RANK | 47 | 47 | 47 | 47 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0110 | |||
| RF | 860 | 860 | 860 | 860 | |||
| AVG Distance | 2.0338e-03 | 2.0338e-03 | 2.0338e-03 | 2.0338e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 48 |
TPM2+G TPM3+G
|
RANK | 48 | 48 | 48 | 48 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0218 | |||
| RF | 860 | 860 | 860 | 860 | |||
| AVG Distance | 2.0454e-03 | 2.0454e-03 | 2.0454e-03 | 2.0454e-03 | |||
| Distance VAR | 1.2233e-10 | 1.2233e-10 | 1.2233e-10 | 1.2233e-10 | |||
| 49 |
TVMef+G
|
RANK | 49 | 49 | 49 | 49 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 860 | 860 | 860 | 860 | |||
| AVG Distance | 2.0442e-03 | 2.0442e-03 | 2.0442e-03 | 2.0442e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 50 |
TrNef
|
RANK | 50 | 50 | 50 | 50 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 862 | 862 | 862 | 862 | |||
| AVG Distance | 2.0579e-03 | 2.0579e-03 | 2.0579e-03 | 2.0579e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 51 |
TPM1uf
|
RANK | 51 | 51 | 51 | 51 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0110 | |||
| RF | 862 | 862 | 862 | 862 | |||
| AVG Distance | 2.0493e-03 | 2.0493e-03 | 2.0493e-03 | 2.0493e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 52 |
TIM1ef+G TIM2ef+G TIM3ef+G SYM+G
|
RANK | 52 | 52 | 52 | 52 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0437 | |||
| RF | 862 | 862 | 862 | 862 | |||
| AVG Distance | 2.0464e-03 | 2.0464e-03 | 2.0464e-03 | 2.0464e-03 | |||
| Distance VAR | 6.1704e-11 | 6.1704e-11 | 6.1704e-11 | 6.1704e-11 | |||
| 53 |
TVM GTR
|
RANK | 53 | 53 | 53 | 53 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0218 | |||
| RF | 862 | 862 | 862 | 862 | |||
| AVG Distance | 2.0610e-03 | 2.0610e-03 | 2.0610e-03 | 2.0610e-03 | |||
| Distance VAR | 8.3657e-16 | 8.3657e-16 | 8.3657e-16 | 8.3657e-16 | |||
| 54 |
K80
|
RANK | 54 | 54 | 54 | 54 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0105 | |||
| RF | 864 | 864 | 864 | 864 | |||
| AVG Distance | 2.1239e-03 | 2.1239e-03 | 2.1239e-03 | 2.1239e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 55 |
TPM1uf+G
|
RANK | 55 | 55 | 55 | 55 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 864 | 864 | 864 | 864 | |||
| AVG Distance | 2.0648e-03 | 2.0648e-03 | 2.0648e-03 | 2.0648e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 56 |
TPM2uf
|
RANK | 56 | 56 | 56 | 56 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 864 | 864 | 864 | 864 | |||
| AVG Distance | 2.0603e-03 | 2.0603e-03 | 2.0603e-03 | 2.0603e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 57 |
TPM2uf+G GTR+G
|
RANK | 57 | 57 | 57 | 57 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0215 | |||
| RF | 864 | 864 | 864 | 864 | |||
| AVG Distance | 2.0668e-03 | 2.0668e-03 | 2.0668e-03 | 2.0668e-03 | |||
| Distance VAR | 1.6697e-12 | 1.6697e-12 | 1.6697e-12 | 1.6697e-12 | |||
| 58 |
TVM+G
|
RANK | 58 | 58 | 58 | 58 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 864 | 864 | 864 | 864 | |||
| AVG Distance | 2.0587e-03 | 2.0587e-03 | 2.0587e-03 | 2.0587e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 59 |
K80+G
|
RANK | 59 | 59 | 59 | 59 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 866 | 866 | 866 | 866 | |||
| AVG Distance | 2.0919e-03 | 2.0919e-03 | 2.0919e-03 | 2.0919e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 60 |
TrNef+G
|
RANK | 60 | 60 | 60 | 60 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0109 | |||
| RF | 866 | 866 | 866 | 866 | |||
| AVG Distance | 2.0411e-03 | 2.0411e-03 | 2.0411e-03 | 2.0411e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 61 |
TrN TPM3uf TIM1 TIM2 TIM3
|
RANK | 61 | 61 | 61 | 61 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0546 | |||
| RF | 866 | 866 | 866 | 866 | |||
| AVG Distance | 2.0636e-03 | 2.0636e-03 | 2.0636e-03 | 2.0636e-03 | |||
| Distance VAR | 4.3270e-13 | 4.3270e-13 | 4.3270e-13 | 4.3270e-13 | |||
| 62 |
JC
|
RANK | 62 | 62 | 62 | 62 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 868 | 868 | 868 | 868 | |||
| AVG Distance | 2.0630e-03 | 2.0630e-03 | 2.0630e-03 | 2.0630e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 63 |
JC+G
|
RANK | 63 | 63 | 63 | 63 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 868 | 868 | 868 | 868 | |||
| AVG Distance | 2.0942e-03 | 2.0942e-03 | 2.0942e-03 | 2.0942e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 64 |
HKY
|
RANK | 64 | 64 | 64 | 64 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 868 | 868 | 868 | 868 | |||
| AVG Distance | 2.0965e-03 | 2.0965e-03 | 2.0965e-03 | 2.0965e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 65 |
TPM3uf+G
|
RANK | 65 | 65 | 65 | 65 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0111 | |||
| RF | 868 | 868 | 868 | 868 | |||
| AVG Distance | 2.0122e-03 | 2.0122e-03 | 2.0122e-03 | 2.0122e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 66 |
TIM1+G TIM2+G
|
RANK | 66 | 66 | 66 | 66 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0215 | |||
| RF | 868 | 868 | 868 | 868 | |||
| AVG Distance | 2.0759e-03 | 2.0759e-03 | 2.0759e-03 | 2.0759e-03 | |||
| Distance VAR | 6.2401e-15 | 6.2401e-15 | 6.2401e-15 | 6.2401e-15 | |||
| 67 |
F81
|
RANK | 67 | 67 | 67 | 67 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 870 | 870 | 870 | 870 | |||
| AVG Distance | 2.0698e-03 | 2.0698e-03 | 2.0698e-03 | 2.0698e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 68 |
TrN+G TIM3+G
|
RANK | 68 | 68 | 68 | 68 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0218 | |||
| RF | 870 | 870 | 870 | 870 | |||
| AVG Distance | 2.0437e-03 | 2.0437e-03 | 2.0437e-03 | 2.0437e-03 | |||
| Distance VAR | 1.2065e-09 | 1.2065e-09 | 1.2065e-09 | 1.2065e-09 | |||
| 69 |
F81+G
|
RANK | 69 | 69 | 69 | 69 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0107 | |||
| RF | 872 | 872 | 872 | 872 | |||
| AVG Distance | 2.0927e-03 | 2.0927e-03 | 2.0927e-03 | 2.0927e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | |||
| 70 |
HKY+G
|
RANK | 70 | 70 | 70 | 70 | |
| Weight | 0.0000 | 0.0000 | 0.0000 | 0.0108 | |||
| RF | 872 | 872 | 872 | 872 | |||
| AVG Distance | 2.0513e-03 | 2.0513e-03 | 2.0513e-03 | 2.0513e-03 | |||
| Distance VAR | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 | 0.0000e+00 |
AIC Selection Results
Model selected
| Model | GTR+I+G | ||
|---|---|---|---|
| partition | 012345 | ||
| -lnL | 48775.3282 | ||
| K | 1178 | ||
| freqA | 0.2999 | R(a) | 0.3197 |
| freqC | 0.1803 | R(b) | 1.1906 |
| freqG | 0.1945 | R(c) | 0.2209 |
| freqT | 0.3253 | R(d) | 0.2859 |
| ti/tv | - | R(e) | 3.3016 |
| R(f) | 1.0000 | ||
| p-inv | 0.8070 | gamma | 1.5270 |
Best model tree
| Model | -lnL | K | AIC | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| GTR+I+G | 48775.3282 | 1178 | 99906.6565 | 0.0000 | 0.9869 | 0.9869 |
| GTR+I | 48780.6471 | 1177 | 99915.2941 | 8.6376 | 0.0131 | 1.0000 |
| TIM2+I+G | 48795.1465 | 1176 | 99942.2930 | 35.6365 | 0.0000 | 1.0000 |
| GTR+G | 48794.2555 | 1177 | 99942.5111 | 35.8546 | 0.0000 | 1.0000 |
| TIM1+I+G | 48796.4385 | 1176 | 99944.8771 | 38.2206 | 0.0000 | 1.0000 |
| TIM2+I | 48800.4252 | 1175 | 99950.8504 | 44.1940 | 0.0000 | 1.0000 |
| TIM1+I | 48801.6610 | 1175 | 99953.3220 | 46.6655 | 0.0000 | 1.0000 |
| TIM2+G | 48812.5564 | 1175 | 99975.1128 | 68.4563 | 0.0000 | 1.0000 |
| TIM1+G | 48813.8249 | 1175 | 99977.6498 | 70.9933 | 0.0000 | 1.0000 |
| TIM3+I+G | 48816.2438 | 1176 | 99984.4876 | 77.8311 | 0.0000 | 1.0000 |
| TIM3+I | 48820.2748 | 1175 | 99990.5496 | 83.8932 | 0.0000 | 1.0000 |
| TrN+I+G | 48822.2934 | 1175 | 99994.5869 | 87.9304 | 0.0000 | 1.0000 |
| TrN+I | 48827.0901 | 1174 | 100002.1802 | 95.5237 | 0.0000 | 1.0000 |
| TVM+I+G | 48829.0650 | 1177 | 100012.1299 | 105.4735 | 0.0000 | 1.0000 |
| TIM3+G | 48834.9378 | 1175 | 100019.8756 | 113.2191 | 0.0000 | 1.0000 |
| TVM+I | 48834.3971 | 1176 | 100020.7942 | 114.1378 | 0.0000 | 1.0000 |
| TrN+G | 48840.1395 | 1174 | 100028.2790 | 121.6225 | 0.0000 | 1.0000 |
| TPM2uf+I+G | 48849.8052 | 1175 | 100049.6104 | 142.9539 | 0.0000 | 1.0000 |
| TPM1uf+I+G | 48851.6517 | 1175 | 100053.3034 | 146.6469 | 0.0000 | 1.0000 |
| TVM+G | 48851.6599 | 1176 | 100055.3199 | 148.6634 | 0.0000 | 1.0000 |
| TPM2uf+I | 48855.0116 | 1174 | 100058.0231 | 151.3667 | 0.0000 | 1.0000 |
| TPM1uf+I | 48856.8677 | 1174 | 100061.7354 | 155.0789 | 0.0000 | 1.0000 |
| TPM2uf+G | 48870.3047 | 1174 | 100088.6094 | 181.9529 | 0.0000 | 1.0000 |
| TPM3uf+I+G | 48869.7799 | 1175 | 100089.5598 | 182.9034 | 0.0000 | 1.0000 |
| TPM1uf+G | 48872.0051 | 1174 | 100092.0103 | 185.3538 | 0.0000 | 1.0000 |
| TPM3uf+I | 48874.9032 | 1174 | 100097.8064 | 191.1499 | 0.0000 | 1.0000 |
| GTR | 48874.3079 | 1176 | 100100.6158 | 193.9593 | 0.0000 | 1.0000 |
| HKY+I+G | 48877.4856 | 1174 | 100102.9712 | 196.3147 | 0.0000 | 1.0000 |
| HKY+I | 48882.3616 | 1173 | 100110.7232 | 204.0667 | 0.0000 | 1.0000 |
| TIM2 | 48891.4721 | 1174 | 100130.9443 | 224.2878 | 0.0000 | 1.0000 |
| TIM1 | 48892.7586 | 1174 | 100133.5172 | 226.8608 | 0.0000 | 1.0000 |
| TPM3uf+G | 48893.1962 | 1174 | 100134.3925 | 227.7360 | 0.0000 | 1.0000 |
| HKY+G | 48898.5561 | 1173 | 100143.1122 | 236.4557 | 0.0000 | 1.0000 |
| TIM3 | 48915.7992 | 1174 | 100179.5983 | 272.9418 | 0.0000 | 1.0000 |
| TrN | 48919.8649 | 1173 | 100185.7297 | 279.0732 | 0.0000 | 1.0000 |
| TVM | 48934.2062 | 1175 | 100218.4123 | 311.7558 | 0.0000 | 1.0000 |
| TPM2uf | 48951.5749 | 1173 | 100249.1497 | 342.4932 | 0.0000 | 1.0000 |
| TPM1uf | 48953.0208 | 1173 | 100252.0415 | 345.3851 | 0.0000 | 1.0000 |
| TPM3uf | 48976.2632 | 1173 | 100298.5264 | 391.8699 | 0.0000 | 1.0000 |
| HKY | 48980.3522 | 1172 | 100304.7043 | 398.0478 | 0.0000 | 1.0000 |
| F81+I+G | 49105.4911 | 1173 | 100556.9821 | 650.3256 | 0.0000 | 1.0000 |
| F81+I | 49111.2328 | 1172 | 100566.4656 | 659.8091 | 0.0000 | 1.0000 |
| F81+G | 49132.1321 | 1172 | 100608.2643 | 701.6078 | 0.0000 | 1.0000 |
| F81 | 49217.1643 | 1171 | 100776.3287 | 869.6722 | 0.0000 | 1.0000 |
| SYM+I+G | 49765.7639 | 1175 | 101881.5277 | 1974.8712 | 0.0000 | 1.0000 |
| SYM+I | 49770.6194 | 1174 | 101889.2387 | 1982.5822 | 0.0000 | 1.0000 |
| TIM3ef+I+G | 49793.9582 | 1173 | 101933.9165 | 2027.2600 | 0.0000 | 1.0000 |
| TIM1ef+I+G | 49794.0278 | 1173 | 101934.0557 | 2027.3992 | 0.0000 | 1.0000 |
| TIM3ef+I | 49798.9305 | 1172 | 101941.8611 | 2035.2046 | 0.0000 | 1.0000 |
| TIM1ef+I | 49798.9834 | 1172 | 101941.9668 | 2035.3104 | 0.0000 | 1.0000 |
| TIM2ef+I+G | 49799.9309 | 1173 | 101945.8618 | 2039.2053 | 0.0000 | 1.0000 |
| SYM+G | 49799.7927 | 1174 | 101947.5854 | 2040.9289 | 0.0000 | 1.0000 |
| TIM2ef+I | 49804.8888 | 1172 | 101953.7776 | 2047.1211 | 0.0000 | 1.0000 |
| TrNef+I+G | 49815.4431 | 1172 | 101974.8861 | 2068.2296 | 0.0000 | 1.0000 |
| TrNef+I | 49820.4936 | 1171 | 101982.9872 | 2076.3308 | 0.0000 | 1.0000 |
| TIM1ef+G | 49823.0623 | 1172 | 101990.1245 | 2083.4680 | 0.0000 | 1.0000 |
| TVMef+I+G | 49823.6593 | 1174 | 101995.3186 | 2088.6621 | 0.0000 | 1.0000 |
| TIM2ef+G | 49827.4992 | 1172 | 101998.9984 | 2092.3419 | 0.0000 | 1.0000 |
| TIM3ef+G | 49829.1155 | 1172 | 102002.2310 | 2095.5745 | 0.0000 | 1.0000 |
| TVMef+I | 49828.9394 | 1173 | 102003.8788 | 2097.2224 | 0.0000 | 1.0000 |
| TrNef+G | 49844.5578 | 1171 | 102031.1157 | 2124.4592 | 0.0000 | 1.0000 |
| TPM1+I+G | 49850.9958 | 1172 | 102045.9916 | 2139.3351 | 0.0000 | 1.0000 |
| TPM3+I+G | 49851.7887 | 1172 | 102047.5774 | 2140.9210 | 0.0000 | 1.0000 |
| TPM1+I | 49855.9543 | 1171 | 102053.9085 | 2147.2520 | 0.0000 | 1.0000 |
| TPM3+I | 49856.3593 | 1171 | 102054.7187 | 2148.0622 | 0.0000 | 1.0000 |
| TPM2+I+G | 49857.5615 | 1172 | 102059.1231 | 2152.4666 | 0.0000 | 1.0000 |
| TVMef+G | 49859.0642 | 1173 | 102064.1285 | 2157.4720 | 0.0000 | 1.0000 |
| TPM2+I | 49862.5250 | 1171 | 102067.0499 | 2160.3934 | 0.0000 | 1.0000 |
| K80+I+G | 49872.6411 | 1171 | 102087.2821 | 2180.6257 | 0.0000 | 1.0000 |
| K80+I | 49877.5907 | 1170 | 102095.1814 | 2188.5249 | 0.0000 | 1.0000 |
| TPM1+G | 49881.8230 | 1171 | 102105.6460 | 2198.9895 | 0.0000 | 1.0000 |
| TPM2+G | 49886.4909 | 1171 | 102114.9817 | 2208.3253 | 0.0000 | 1.0000 |
| TPM3+G | 49888.2461 | 1171 | 102118.4923 | 2211.8358 | 0.0000 | 1.0000 |
| SYM | 49889.7210 | 1173 | 102125.4420 | 2218.7855 | 0.0000 | 1.0000 |
| K80+G | 49903.4319 | 1170 | 102146.8638 | 2240.2073 | 0.0000 | 1.0000 |
| TIM1ef | 49910.5173 | 1171 | 102163.0346 | 2256.3781 | 0.0000 | 1.0000 |
| TIM2ef | 49914.1304 | 1171 | 102170.2607 | 2263.6043 | 0.0000 | 1.0000 |
| TIM3ef | 49919.4177 | 1171 | 102180.8353 | 2274.1789 | 0.0000 | 1.0000 |
| TrNef | 49932.0113 | 1170 | 102204.0225 | 2297.3660 | 0.0000 | 1.0000 |
| TVMef | 49948.9257 | 1172 | 102241.8514 | 2335.1950 | 0.0000 | 1.0000 |
| TPM1 | 49969.7206 | 1170 | 102279.4413 | 2372.7848 | 0.0000 | 1.0000 |
| TPM2 | 49973.3411 | 1170 | 102286.6822 | 2380.0258 | 0.0000 | 1.0000 |
| TPM3 | 49978.7024 | 1170 | 102297.4048 | 2390.7483 | 0.0000 | 1.0000 |
| K80 | 49991.3144 | 1169 | 102320.6288 | 2413.9723 | 0.0000 | 1.0000 |
| JC+I+G | 50090.8336 | 1170 | 102521.6671 | 2615.0106 | 0.0000 | 1.0000 |
| JC+I | 50096.5624 | 1169 | 102531.1249 | 2624.4684 | 0.0000 | 1.0000 |
| JC+G | 50122.3885 | 1169 | 102582.7769 | 2676.1204 | 0.0000 | 1.0000 |
| JC | 50210.2631 | 1168 | 102756.5261 | 2849.8696 | 0.0000 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| AIC: | Akaike Information Criterion |
| delta: | AIC difference |
| weight: | AIC weight |
| cumWeight: | cumulative AIC weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
GTR+I+G GTR+I TIM2+I+G GTR+G TIM1+I+G TIM2+I TIM1+I TIM2+G TIM1+G TIM3+I+G TIM3+I TrN+I+G TrN+I TVM+I+G TIM3+G TVM+I TrN+G TPM2uf+I+G TPM1uf+I+G TVM+G TPM2uf+I TPM1uf+I TPM2uf+G TPM3uf+I+G TPM1uf+G TPM3uf+I GTR HKY+I+G HKY+I TIM2 TIM1 TPM3uf+G HKY+G TIM3 TrN TVM TPM2uf TPM1uf TPM3uf HKY F81+I+G F81+I F81+G F81 SYM+I+G SYM+I TIM3ef+I+G TIM1ef+I+G TIM3ef+I TIM1ef+I TIM2ef+I+G SYM+G TIM2ef+I TrNef+I+G TrNef+I TIM1ef+G TVMef+I+G TIM2ef+G TIM3ef+G TVMef+I TrNef+G TPM1+I+G TPM3+I+G TPM1+I TPM3+I TPM2+I+G TVMef+G TPM2+I K80+I+G K80+I TPM1+G TPM2+G TPM3+G SYM K80+G TIM1ef TIM2ef TIM3ef TrNef TVMef TPM1 TPM2 TPM3 K80 JC+I+G JC+I JC+G JC
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (GTR+I+G) selected by AIC
with jModeltest 2.1.10 v20160303 on Fri Apr 17 22:49:22 PDT 2020]
BEGIN PAUP;
Lset base=(0.2999 0.1803 0.1945 ) nst=6 rmat=(0.3197 1.1906 0.2209 0.2859 3.3016) rates=gamma shape=1.5270 ncat=4 pinvar=0.8070;
END;
--
Model Averaged Phylogeny
| Selection criterion | AIC |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |
AICc Selection Results
Model selected
| Model | GTR+I+G | ||
|---|---|---|---|
| partition | 012345 | ||
| -lnL | 48775.3282 | ||
| K | 1178 | ||
| freqA | 0.2999 | R(a) | 0.3197 |
| freqC | 0.1803 | R(b) | 1.1906 |
| freqG | 0.1945 | R(c) | 0.2209 |
| freqT | 0.3253 | R(d) | 0.2859 |
| ti/tv | - | R(e) | 3.3016 |
| R(f) | 1.0000 | ||
| p-inv | 0.8070 | gamma | 1.5270 |
Best model tree
| Model | -lnL | K | AICc | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| GTR+I+G | 48775.3282 | 1178 | 100003.1823 | 0.0000 | 0.9857 | 0.9857 |
| GTR+I | 48780.6471 | 1177 | 100011.6529 | 8.4705 | 0.0143 | 1.0000 |
| TIM2+I+G | 48795.1465 | 1176 | 100038.4848 | 35.3024 | 0.0000 | 1.0000 |
| GTR+G | 48794.2555 | 1177 | 100038.8698 | 35.6875 | 0.0000 | 1.0000 |
| TIM1+I+G | 48796.4385 | 1176 | 100041.0689 | 37.8865 | 0.0000 | 1.0000 |
| TIM2+I | 48800.4252 | 1175 | 100046.8755 | 43.6931 | 0.0000 | 1.0000 |
| TIM1+I | 48801.6610 | 1175 | 100049.3470 | 46.1647 | 0.0000 | 1.0000 |
| TIM2+G | 48812.5564 | 1175 | 100071.1378 | 67.9555 | 0.0000 | 1.0000 |
| TIM1+G | 48813.8249 | 1175 | 100073.6748 | 70.4925 | 0.0000 | 1.0000 |
| TIM3+I+G | 48816.2438 | 1176 | 100080.6794 | 77.4970 | 0.0000 | 1.0000 |
| TIM3+I | 48820.2748 | 1175 | 100086.5747 | 83.3923 | 0.0000 | 1.0000 |
| TrN+I+G | 48822.2934 | 1175 | 100090.6119 | 87.4296 | 0.0000 | 1.0000 |
| TrN+I | 48827.0901 | 1174 | 100098.0386 | 94.8563 | 0.0000 | 1.0000 |
| TVM+I+G | 48829.0650 | 1177 | 100108.4887 | 105.3064 | 0.0000 | 1.0000 |
| TIM3+G | 48834.9378 | 1175 | 100115.9006 | 112.7183 | 0.0000 | 1.0000 |
| TVM+I | 48834.3971 | 1176 | 100116.9860 | 113.8037 | 0.0000 | 1.0000 |
| TrN+G | 48840.1395 | 1174 | 100124.1373 | 120.9550 | 0.0000 | 1.0000 |
| TPM2uf+I+G | 48849.8052 | 1175 | 100145.6354 | 142.4531 | 0.0000 | 1.0000 |
| TPM1uf+I+G | 48851.6517 | 1175 | 100149.3284 | 146.1461 | 0.0000 | 1.0000 |
| TVM+G | 48851.6599 | 1176 | 100151.5117 | 148.3294 | 0.0000 | 1.0000 |
| TPM2uf+I | 48855.0116 | 1174 | 100153.8815 | 150.6992 | 0.0000 | 1.0000 |
| TPM1uf+I | 48856.8677 | 1174 | 100157.5938 | 154.4115 | 0.0000 | 1.0000 |
| TPM2uf+G | 48870.3047 | 1174 | 100184.4678 | 181.2854 | 0.0000 | 1.0000 |
| TPM3uf+I+G | 48869.7799 | 1175 | 100185.5849 | 182.4025 | 0.0000 | 1.0000 |
| TPM1uf+G | 48872.0051 | 1174 | 100187.8687 | 184.6863 | 0.0000 | 1.0000 |
| TPM3uf+I | 48874.9032 | 1174 | 100193.6648 | 190.4825 | 0.0000 | 1.0000 |
| GTR | 48874.3079 | 1176 | 100196.8076 | 193.6253 | 0.0000 | 1.0000 |
| HKY+I+G | 48877.4856 | 1174 | 100198.8296 | 195.6473 | 0.0000 | 1.0000 |
| HKY+I | 48882.3616 | 1173 | 100206.4151 | 203.2328 | 0.0000 | 1.0000 |
| TIM2 | 48891.4721 | 1174 | 100226.8027 | 223.6203 | 0.0000 | 1.0000 |
| TIM1 | 48892.7586 | 1174 | 100229.3756 | 226.1933 | 0.0000 | 1.0000 |
| TPM3uf+G | 48893.1962 | 1174 | 100230.2509 | 227.0685 | 0.0000 | 1.0000 |
| HKY+G | 48898.5561 | 1173 | 100238.8041 | 235.6217 | 0.0000 | 1.0000 |
| TIM3 | 48915.7992 | 1174 | 100275.4567 | 272.2744 | 0.0000 | 1.0000 |
| TrN | 48919.8649 | 1173 | 100281.4216 | 278.2393 | 0.0000 | 1.0000 |
| TVM | 48934.2062 | 1175 | 100314.4373 | 311.2550 | 0.0000 | 1.0000 |
| TPM2uf | 48951.5749 | 1173 | 100344.8416 | 341.6593 | 0.0000 | 1.0000 |
| TPM1uf | 48953.0208 | 1173 | 100347.7334 | 344.5511 | 0.0000 | 1.0000 |
| TPM3uf | 48976.2632 | 1173 | 100394.2183 | 391.0359 | 0.0000 | 1.0000 |
| HKY | 48980.3522 | 1172 | 100400.2299 | 397.0475 | 0.0000 | 1.0000 |
| F81+I+G | 49105.4911 | 1173 | 100652.6740 | 649.4917 | 0.0000 | 1.0000 |
| F81+I | 49111.2328 | 1172 | 100661.9912 | 658.8088 | 0.0000 | 1.0000 |
| F81+G | 49132.1321 | 1172 | 100703.7898 | 700.6075 | 0.0000 | 1.0000 |
| F81 | 49217.1643 | 1171 | 100871.6880 | 868.5057 | 0.0000 | 1.0000 |
| SYM+I+G | 49765.7639 | 1175 | 101977.5527 | 1974.3704 | 0.0000 | 1.0000 |
| SYM+I | 49770.6194 | 1174 | 101985.0971 | 1981.9148 | 0.0000 | 1.0000 |
| TIM3ef+I+G | 49793.9582 | 1173 | 102029.6084 | 2026.4260 | 0.0000 | 1.0000 |
| TIM1ef+I+G | 49794.0278 | 1173 | 102029.7476 | 2026.5652 | 0.0000 | 1.0000 |
| TIM3ef+I | 49798.9305 | 1172 | 102037.3866 | 2034.2043 | 0.0000 | 1.0000 |
| TIM1ef+I | 49798.9834 | 1172 | 102037.4924 | 2034.3101 | 0.0000 | 1.0000 |
| TIM2ef+I+G | 49799.9309 | 1173 | 102041.5537 | 2038.3713 | 0.0000 | 1.0000 |
| SYM+G | 49799.7927 | 1174 | 102043.4438 | 2040.2614 | 0.0000 | 1.0000 |
| TIM2ef+I | 49804.8888 | 1172 | 102049.3032 | 2046.1209 | 0.0000 | 1.0000 |
| TrNef+I+G | 49815.4431 | 1172 | 102070.4117 | 2067.2293 | 0.0000 | 1.0000 |
| TrNef+I | 49820.4936 | 1171 | 102078.3466 | 2075.1643 | 0.0000 | 1.0000 |
| TIM1ef+G | 49823.0623 | 1172 | 102085.6501 | 2082.4677 | 0.0000 | 1.0000 |
| TVMef+I+G | 49823.6593 | 1174 | 102091.1769 | 2087.9946 | 0.0000 | 1.0000 |
| TIM2ef+G | 49827.4992 | 1172 | 102094.5240 | 2091.3416 | 0.0000 | 1.0000 |
| TIM3ef+G | 49829.1155 | 1172 | 102097.7565 | 2094.5742 | 0.0000 | 1.0000 |
| TVMef+I | 49828.9394 | 1173 | 102099.5707 | 2096.3884 | 0.0000 | 1.0000 |
| TrNef+G | 49844.5578 | 1171 | 102126.4750 | 2123.2927 | 0.0000 | 1.0000 |
| TPM1+I+G | 49850.9958 | 1172 | 102141.5172 | 2138.3349 | 0.0000 | 1.0000 |
| TPM3+I+G | 49851.7887 | 1172 | 102143.1030 | 2139.9207 | 0.0000 | 1.0000 |
| TPM1+I | 49855.9543 | 1171 | 102149.2679 | 2146.0856 | 0.0000 | 1.0000 |
| TPM3+I | 49856.3593 | 1171 | 102150.0780 | 2146.8957 | 0.0000 | 1.0000 |
| TPM2+I+G | 49857.5615 | 1172 | 102154.6486 | 2151.4663 | 0.0000 | 1.0000 |
| TVMef+G | 49859.0642 | 1173 | 102159.8204 | 2156.6380 | 0.0000 | 1.0000 |
| TPM2+I | 49862.5250 | 1171 | 102162.4093 | 2159.2270 | 0.0000 | 1.0000 |
| K80+I+G | 49872.6411 | 1171 | 102182.6415 | 2179.4592 | 0.0000 | 1.0000 |
| K80+I | 49877.5907 | 1170 | 102190.3747 | 2187.1924 | 0.0000 | 1.0000 |
| TPM1+G | 49881.8230 | 1171 | 102201.0054 | 2197.8230 | 0.0000 | 1.0000 |
| TPM2+G | 49886.4909 | 1171 | 102210.3411 | 2207.1588 | 0.0000 | 1.0000 |
| TPM3+G | 49888.2461 | 1171 | 102213.8516 | 2210.6693 | 0.0000 | 1.0000 |
| SYM | 49889.7210 | 1173 | 102221.1339 | 2217.9515 | 0.0000 | 1.0000 |
| K80+G | 49903.4319 | 1170 | 102242.0571 | 2238.8748 | 0.0000 | 1.0000 |
| TIM1ef | 49910.5173 | 1171 | 102258.3939 | 2255.2116 | 0.0000 | 1.0000 |
| TIM2ef | 49914.1304 | 1171 | 102265.6201 | 2262.4378 | 0.0000 | 1.0000 |
| TIM3ef | 49919.4177 | 1171 | 102276.1947 | 2273.0124 | 0.0000 | 1.0000 |
| TrNef | 49932.0113 | 1170 | 102299.2158 | 2296.0335 | 0.0000 | 1.0000 |
| TVMef | 49948.9257 | 1172 | 102337.3770 | 2334.1947 | 0.0000 | 1.0000 |
| TPM1 | 49969.7206 | 1170 | 102374.6346 | 2371.4523 | 0.0000 | 1.0000 |
| TPM2 | 49973.3411 | 1170 | 102381.8756 | 2378.6933 | 0.0000 | 1.0000 |
| TPM3 | 49978.7024 | 1170 | 102392.5981 | 2389.4158 | 0.0000 | 1.0000 |
| K80 | 49991.3144 | 1169 | 102415.6563 | 2412.4739 | 0.0000 | 1.0000 |
| JC+I+G | 50090.8336 | 1170 | 102616.8604 | 2613.6781 | 0.0000 | 1.0000 |
| JC+I | 50096.5624 | 1169 | 102626.1523 | 2622.9700 | 0.0000 | 1.0000 |
| JC+G | 50122.3885 | 1169 | 102677.8044 | 2674.6220 | 0.0000 | 1.0000 |
| JC | 50210.2631 | 1168 | 102851.3878 | 2848.2055 | 0.0000 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| AICc: | Corrected Akaike Information Criterion |
| delta: | AICc difference |
| weight: | AICc weight |
| cumWeight: | cumulative AICc weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
GTR+I+G GTR+I TIM2+I+G GTR+G TIM1+I+G TIM2+I TIM1+I TIM2+G TIM1+G TIM3+I+G TIM3+I TrN+I+G TrN+I TVM+I+G TIM3+G TVM+I TrN+G TPM2uf+I+G TPM1uf+I+G TVM+G TPM2uf+I TPM1uf+I TPM2uf+G TPM3uf+I+G TPM1uf+G TPM3uf+I GTR HKY+I+G HKY+I TIM2 TIM1 TPM3uf+G HKY+G TIM3 TrN TVM TPM2uf TPM1uf TPM3uf HKY F81+I+G F81+I F81+G F81 SYM+I+G SYM+I TIM3ef+I+G TIM1ef+I+G TIM3ef+I TIM1ef+I TIM2ef+I+G SYM+G TIM2ef+I TrNef+I+G TrNef+I TIM1ef+G TVMef+I+G TIM2ef+G TIM3ef+G TVMef+I TrNef+G TPM1+I+G TPM3+I+G TPM1+I TPM3+I TPM2+I+G TVMef+G TPM2+I K80+I+G K80+I TPM1+G TPM2+G TPM3+G SYM K80+G TIM1ef TIM2ef TIM3ef TrNef TVMef TPM1 TPM2 TPM3 K80 JC+I+G JC+I JC+G JC
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (GTR+I+G) selected by AICc
with jModeltest 2.1.10 v20160303 on Fri Apr 17 22:49:22 PDT 2020]
BEGIN PAUP;
Lset base=(0.2999 0.1803 0.1945 ) nst=6 rmat=(0.3197 1.1906 0.2209 0.2859 3.3016) rates=gamma shape=1.5270 ncat=4 pinvar=0.8070;
END;
--
Model Averaged Phylogeny
| Selection criterion | AICc |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |
BIC Selection Results
Model selected
| Model | GTR+I+G | ||
|---|---|---|---|
| partition | 012345 | ||
| -lnL | 48775.3282 | ||
| K | 1178 | ||
| freqA | 0.2999 | R(a) | 0.3197 |
| freqC | 0.1803 | R(b) | 1.1906 |
| freqG | 0.1945 | R(c) | 0.2209 |
| freqT | 0.3253 | R(d) | 0.2859 |
| ti/tv | - | R(e) | 3.3016 |
| R(f) | 1.0000 | ||
| p-inv | 0.8070 | gamma | 1.5270 |
Best model tree
| Model | -lnL | K | BIC | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| GTR+I+G | 48775.3282 | 1178 | 109692.8737 | 0.0000 | 0.5411 | 0.5411 |
| GTR+I | 48780.6471 | 1177 | 109693.2039 | 0.3302 | 0.4588 | 0.9999 |
| TIM2+I+G | 48795.1465 | 1176 | 109711.8952 | 19.0215 | 0.0000 | 0.9999 |
| TIM2+I | 48800.4252 | 1175 | 109712.1452 | 19.2715 | 0.0000 | 1.0000 |
| TIM1+I+G | 48796.4385 | 1176 | 109714.4793 | 21.6056 | 0.0000 | 1.0000 |
| TIM1+I | 48801.6610 | 1175 | 109714.6167 | 21.7430 | 0.0000 | 1.0000 |
| GTR+G | 48794.2555 | 1177 | 109720.4208 | 27.5471 | 0.0000 | 1.0000 |
| TIM2+G | 48812.5564 | 1175 | 109736.4076 | 43.5339 | 0.0000 | 1.0000 |
| TIM1+G | 48813.8249 | 1175 | 109738.9445 | 46.0708 | 0.0000 | 1.0000 |
| TIM3+I | 48820.2748 | 1175 | 109751.8444 | 58.9707 | 0.0000 | 1.0000 |
| TIM3+I+G | 48816.2438 | 1176 | 109754.0898 | 61.2161 | 0.0000 | 1.0000 |
| TrN+I | 48827.0901 | 1174 | 109755.1675 | 62.2938 | 0.0000 | 1.0000 |
| TrN+I+G | 48822.2934 | 1175 | 109755.8817 | 63.0079 | 0.0000 | 1.0000 |
| TIM3+G | 48834.9378 | 1175 | 109781.1704 | 88.2966 | 0.0000 | 1.0000 |
| TrN+G | 48840.1395 | 1174 | 109781.2663 | 88.3925 | 0.0000 | 1.0000 |
| TVM+I+G | 48829.0650 | 1177 | 109790.0397 | 97.1660 | 0.0000 | 1.0000 |
| TVM+I | 48834.3971 | 1176 | 109790.3965 | 97.5228 | 0.0000 | 1.0000 |
| TPM2uf+I+G | 48849.8052 | 1175 | 109810.9051 | 118.0314 | 0.0000 | 1.0000 |
| TPM2uf+I | 48855.0116 | 1174 | 109811.0104 | 118.1367 | 0.0000 | 1.0000 |
| TPM1uf+I+G | 48851.6517 | 1175 | 109814.5982 | 121.7245 | 0.0000 | 1.0000 |
| TPM1uf+I | 48856.8677 | 1174 | 109814.7227 | 121.8490 | 0.0000 | 1.0000 |
| TVM+G | 48851.6599 | 1176 | 109824.9221 | 132.0484 | 0.0000 | 1.0000 |
| TPM2uf+G | 48870.3047 | 1174 | 109841.5967 | 148.7230 | 0.0000 | 1.0000 |
| TPM1uf+G | 48872.0051 | 1174 | 109844.9976 | 152.1239 | 0.0000 | 1.0000 |
| TPM3uf+I | 48874.9032 | 1174 | 109850.7937 | 157.9200 | 0.0000 | 1.0000 |
| TPM3uf+I+G | 48869.7799 | 1175 | 109850.8546 | 157.9809 | 0.0000 | 1.0000 |
| HKY+I | 48882.3616 | 1173 | 109855.4030 | 162.5293 | 0.0000 | 1.0000 |
| HKY+I+G | 48877.4856 | 1174 | 109855.9585 | 163.0848 | 0.0000 | 1.0000 |
| GTR | 48874.3079 | 1176 | 109870.2181 | 177.3444 | 0.0000 | 1.0000 |
| TIM2 | 48891.4721 | 1174 | 109883.9316 | 191.0579 | 0.0000 | 1.0000 |
| TIM1 | 48892.7586 | 1174 | 109886.5045 | 193.6308 | 0.0000 | 1.0000 |
| TPM3uf+G | 48893.1962 | 1174 | 109887.3798 | 194.5061 | 0.0000 | 1.0000 |
| HKY+G | 48898.5561 | 1173 | 109887.7920 | 194.9183 | 0.0000 | 1.0000 |
| TrN | 48919.8649 | 1173 | 109930.4095 | 237.5358 | 0.0000 | 1.0000 |
| TIM3 | 48915.7992 | 1174 | 109932.5856 | 239.7119 | 0.0000 | 1.0000 |
| TVM | 48934.2062 | 1175 | 109979.7071 | 286.8334 | 0.0000 | 1.0000 |
| TPM2uf | 48951.5749 | 1173 | 109993.8295 | 300.9558 | 0.0000 | 1.0000 |
| TPM1uf | 48953.0208 | 1173 | 109996.7213 | 303.8476 | 0.0000 | 1.0000 |
| HKY | 48980.3522 | 1172 | 110041.0766 | 348.2029 | 0.0000 | 1.0000 |
| TPM3uf | 48976.2632 | 1173 | 110043.2062 | 350.3325 | 0.0000 | 1.0000 |
| F81+I+G | 49105.4911 | 1173 | 110301.6619 | 608.7882 | 0.0000 | 1.0000 |
| F81+I | 49111.2328 | 1172 | 110302.8379 | 609.9642 | 0.0000 | 1.0000 |
| F81+G | 49132.1321 | 1172 | 110344.6366 | 651.7629 | 0.0000 | 1.0000 |
| F81 | 49217.1643 | 1171 | 110504.3935 | 811.5198 | 0.0000 | 1.0000 |
| SYM+I | 49770.6194 | 1174 | 111642.2260 | 1949.3523 | 0.0000 | 1.0000 |
| SYM+I+G | 49765.7639 | 1175 | 111642.8225 | 1949.9488 | 0.0000 | 1.0000 |
| TIM3ef+I | 49798.9305 | 1172 | 111678.2334 | 1985.3597 | 0.0000 | 1.0000 |
| TIM1ef+I | 49798.9834 | 1172 | 111678.3392 | 1985.4655 | 0.0000 | 1.0000 |
| TIM3ef+I+G | 49793.9582 | 1173 | 111678.5963 | 1985.7226 | 0.0000 | 1.0000 |
| TIM1ef+I+G | 49794.0278 | 1173 | 111678.7355 | 1985.8618 | 0.0000 | 1.0000 |
| TIM2ef+I | 49804.8888 | 1172 | 111690.1499 | 1997.2762 | 0.0000 | 1.0000 |
| TIM2ef+I+G | 49799.9309 | 1173 | 111690.5416 | 1997.6679 | 0.0000 | 1.0000 |
| SYM+G | 49799.7927 | 1174 | 111700.5727 | 2007.6990 | 0.0000 | 1.0000 |
| TrNef+I | 49820.4936 | 1171 | 111711.0521 | 2018.1784 | 0.0000 | 1.0000 |
| TrNef+I+G | 49815.4431 | 1172 | 111711.2584 | 2018.3847 | 0.0000 | 1.0000 |
| TIM1ef+G | 49823.0623 | 1172 | 111726.4968 | 2033.6231 | 0.0000 | 1.0000 |
| TIM2ef+G | 49827.4992 | 1172 | 111735.3707 | 2042.4970 | 0.0000 | 1.0000 |
| TIM3ef+G | 49829.1155 | 1172 | 111738.6033 | 2045.7296 | 0.0000 | 1.0000 |
| TVMef+I+G | 49823.6593 | 1174 | 111748.3059 | 2055.4321 | 0.0000 | 1.0000 |
| TVMef+I | 49828.9394 | 1173 | 111748.5586 | 2055.6849 | 0.0000 | 1.0000 |
| TrNef+G | 49844.5578 | 1171 | 111759.1805 | 2066.3068 | 0.0000 | 1.0000 |
| TPM1+I | 49855.9543 | 1171 | 111781.9734 | 2089.0996 | 0.0000 | 1.0000 |
| TPM1+I+G | 49850.9958 | 1172 | 111782.3639 | 2089.4902 | 0.0000 | 1.0000 |
| TPM3+I | 49856.3593 | 1171 | 111782.7835 | 2089.9098 | 0.0000 | 1.0000 |
| TPM3+I+G | 49851.7887 | 1172 | 111783.9498 | 2091.0761 | 0.0000 | 1.0000 |
| TPM2+I | 49862.5250 | 1171 | 111795.1148 | 2102.2410 | 0.0000 | 1.0000 |
| TPM2+I+G | 49857.5615 | 1172 | 111795.4954 | 2102.6217 | 0.0000 | 1.0000 |
| TVMef+G | 49859.0642 | 1173 | 111808.8083 | 2115.9346 | 0.0000 | 1.0000 |
| K80+I | 49877.5907 | 1170 | 111814.9387 | 2122.0650 | 0.0000 | 1.0000 |
| K80+I+G | 49872.6411 | 1171 | 111815.3470 | 2122.4733 | 0.0000 | 1.0000 |
| TPM1+G | 49881.8230 | 1171 | 111833.7108 | 2140.8371 | 0.0000 | 1.0000 |
| TPM2+G | 49886.4909 | 1171 | 111843.0466 | 2150.1729 | 0.0000 | 1.0000 |
| TPM3+G | 49888.2461 | 1171 | 111846.5571 | 2153.6834 | 0.0000 | 1.0000 |
| K80+G | 49903.4319 | 1170 | 111866.6211 | 2173.7474 | 0.0000 | 1.0000 |
| SYM | 49889.7210 | 1173 | 111870.1218 | 2177.2481 | 0.0000 | 1.0000 |
| TIM1ef | 49910.5173 | 1171 | 111891.0994 | 2198.2257 | 0.0000 | 1.0000 |
| TIM2ef | 49914.1304 | 1171 | 111898.3256 | 2205.4519 | 0.0000 | 1.0000 |
| TIM3ef | 49919.4177 | 1171 | 111908.9002 | 2216.0265 | 0.0000 | 1.0000 |
| TrNef | 49932.0113 | 1170 | 111923.7799 | 2230.9062 | 0.0000 | 1.0000 |
| TVMef | 49948.9257 | 1172 | 111978.2238 | 2285.3501 | 0.0000 | 1.0000 |
| TPM1 | 49969.7206 | 1170 | 111999.1986 | 2306.3249 | 0.0000 | 1.0000 |
| TPM2 | 49973.3411 | 1170 | 112006.4396 | 2313.5659 | 0.0000 | 1.0000 |
| TPM3 | 49978.7024 | 1170 | 112017.1622 | 2324.2884 | 0.0000 | 1.0000 |
| K80 | 49991.3144 | 1169 | 112032.0787 | 2339.2050 | 0.0000 | 1.0000 |
| JC+I+G | 50090.8336 | 1170 | 112241.4245 | 2548.5507 | 0.0000 | 1.0000 |
| JC+I | 50096.5624 | 1169 | 112242.5747 | 2549.7010 | 0.0000 | 1.0000 |
| JC+G | 50122.3885 | 1169 | 112294.2268 | 2601.3531 | 0.0000 | 1.0000 |
| JC | 50210.2631 | 1168 | 112459.6685 | 2766.7948 | 0.0000 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| BIC: | Bayesian Information Criterion |
| delta: | BIC difference |
| weight: | BIC weight |
| cumWeight: | cumulative BIC weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
GTR+I+G GTR+I TIM2+I+G TIM2+I TIM1+I+G TIM1+I GTR+G TIM2+G TIM1+G TIM3+I TIM3+I+G TrN+I TrN+I+G TIM3+G TrN+G TVM+I+G TVM+I TPM2uf+I+G TPM2uf+I TPM1uf+I+G TPM1uf+I TVM+G TPM2uf+G TPM1uf+G TPM3uf+I TPM3uf+I+G HKY+I HKY+I+G GTR TIM2 TIM1 TPM3uf+G HKY+G TrN TIM3 TVM TPM2uf TPM1uf HKY TPM3uf F81+I+G F81+I F81+G F81 SYM+I SYM+I+G TIM3ef+I TIM1ef+I TIM3ef+I+G TIM1ef+I+G TIM2ef+I TIM2ef+I+G SYM+G TrNef+I TrNef+I+G TIM1ef+G TIM2ef+G TIM3ef+G TVMef+I+G TVMef+I TrNef+G TPM1+I TPM1+I+G TPM3+I TPM3+I+G TPM2+I TPM2+I+G TVMef+G K80+I K80+I+G TPM1+G TPM2+G TPM3+G K80+G SYM TIM1ef TIM2ef TIM3ef TrNef TVMef TPM1 TPM2 TPM3 K80 JC+I+G JC+I JC+G JC
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (GTR+I+G) selected by BIC
with jModeltest 2.1.10 v20160303 on Fri Apr 17 22:49:22 PDT 2020]
BEGIN PAUP;
Lset base=(0.2999 0.1803 0.1945 ) nst=6 rmat=(0.3197 1.1906 0.2209 0.2859 3.3016) rates=gamma shape=1.5270 ncat=4 pinvar=0.8070;
END;
--
Model Averaged Phylogeny
| Selection criterion | BIC |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |
Decision Theory Selection Results
Model selected
| Model | GTR+I+G | ||
|---|---|---|---|
| partition | 012345 | ||
| -lnL | 48775.3282 | ||
| K | 1178 | ||
| freqA | 0.2999 | R(a) | 0.3197 |
| freqC | 0.1803 | R(b) | 1.1906 |
| freqG | 0.1945 | R(c) | 0.2209 |
| freqT | 0.3253 | R(d) | 0.2859 |
| ti/tv | - | R(e) | 3.3016 |
| R(f) | 1.0000 | ||
| p-inv | 0.8070 | gamma | 1.5270 |
Best model tree
| Model | -lnL | K | DT | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| GTR+I+G | 48775.3282 | 1178 | 0.0009 | 0.0000 | 0.0236 | 0.0236 |
| TPM2uf+I+G | 48849.8052 | 1175 | 0.0011 | 0.0002 | 0.0203 | 0.0439 |
| GTR+I | 48780.6471 | 1177 | 0.0011 | 0.0002 | 0.0200 | 0.0639 |
| TIM1+I+G | 48796.4385 | 1176 | 0.0016 | 0.0006 | 0.0143 | 0.0783 |
| TPM3uf+I+G | 48869.7799 | 1175 | 0.0016 | 0.0007 | 0.0139 | 0.0922 |
| TIM2+I+G | 48795.1465 | 1176 | 0.0016 | 0.0007 | 0.0139 | 0.1060 |
| TIM3+I+G | 48816.2438 | 1176 | 0.0017 | 0.0008 | 0.0131 | 0.1192 |
| TVM+I+G | 48829.0650 | 1177 | 0.0017 | 0.0008 | 0.0131 | 0.1322 |
| HKY+I+G | 48877.4856 | 1174 | 0.0018 | 0.0009 | 0.0124 | 0.1446 |
| F81+I+G | 49105.4911 | 1173 | 0.0020 | 0.0010 | 0.0113 | 0.1560 |
| TrN+I+G | 48822.2934 | 1175 | 0.0020 | 0.0011 | 0.0112 | 0.1671 |
| TPM2uf+I | 48855.0116 | 1174 | 0.0020 | 0.0011 | 0.0112 | 0.1783 |
| TIM3+G | 48834.9378 | 1175 | 0.0020 | 0.0011 | 0.0111 | 0.1894 |
| TPM3uf+G | 48893.1962 | 1174 | 0.0020 | 0.0011 | 0.0111 | 0.2005 |
| TIM1+I | 48801.6610 | 1175 | 0.0020 | 0.0011 | 0.0110 | 0.2115 |
| TIM3+I | 48820.2748 | 1175 | 0.0020 | 0.0011 | 0.0110 | 0.2225 |
| TIM3ef+G | 49829.1155 | 1172 | 0.0020 | 0.0011 | 0.0110 | 0.2335 |
| TPM3+G | 49888.2461 | 1171 | 0.0020 | 0.0011 | 0.0110 | 0.2445 |
| TPM1+G | 49881.8230 | 1171 | 0.0020 | 0.0011 | 0.0110 | 0.2555 |
| TPM1uf | 48953.0208 | 1173 | 0.0020 | 0.0011 | 0.0110 | 0.2664 |
| TVMef+G | 49859.0642 | 1173 | 0.0020 | 0.0011 | 0.0109 | 0.2773 |
| SYM+G | 49799.7927 | 1174 | 0.0020 | 0.0011 | 0.0109 | 0.2883 |
| TPM2uf | 48951.5749 | 1173 | 0.0020 | 0.0011 | 0.0109 | 0.2992 |
| TIM2 | 48891.4721 | 1174 | 0.0020 | 0.0011 | 0.0109 | 0.3101 |
| TIM1ef+G | 49823.0623 | 1172 | 0.0020 | 0.0011 | 0.0109 | 0.3210 |
| TIM1 | 48892.7586 | 1174 | 0.0020 | 0.0011 | 0.0109 | 0.3320 |
| TPM3uf+I | 48874.9032 | 1174 | 0.0020 | 0.0011 | 0.0109 | 0.3429 |
| TrN | 48919.8649 | 1173 | 0.0020 | 0.0011 | 0.0109 | 0.3538 |
| TVM | 48934.2062 | 1175 | 0.0020 | 0.0011 | 0.0109 | 0.3647 |
| TIM3 | 48915.7992 | 1174 | 0.0020 | 0.0011 | 0.0109 | 0.3756 |
| GTR | 48874.3079 | 1176 | 0.0020 | 0.0011 | 0.0109 | 0.3866 |
| TPM3uf | 48976.2632 | 1173 | 0.0020 | 0.0011 | 0.0109 | 0.3975 |
| TIM2ef+I+G | 49799.9309 | 1173 | 0.0021 | 0.0011 | 0.0109 | 0.4084 |
| TrNef+G | 49844.5578 | 1171 | 0.0021 | 0.0011 | 0.0109 | 0.4193 |
| JC+I | 50096.5624 | 1169 | 0.0021 | 0.0011 | 0.0109 | 0.4301 |
| TPM1uf+I+G | 48851.6517 | 1175 | 0.0021 | 0.0011 | 0.0109 | 0.4410 |
| HKY+I | 48882.3616 | 1173 | 0.0021 | 0.0011 | 0.0109 | 0.4519 |
| TIM3ef | 49919.4177 | 1171 | 0.0021 | 0.0011 | 0.0109 | 0.4628 |
| TIM2ef+G | 49827.4992 | 1172 | 0.0021 | 0.0011 | 0.0109 | 0.4736 |
| TPM2+G | 49886.4909 | 1171 | 0.0021 | 0.0011 | 0.0109 | 0.4845 |
| TIM2ef+I | 49804.8888 | 1172 | 0.0021 | 0.0011 | 0.0109 | 0.4953 |
| TPM3 | 49978.7024 | 1170 | 0.0021 | 0.0011 | 0.0109 | 0.5062 |
| TrN+I | 48827.0901 | 1174 | 0.0021 | 0.0011 | 0.0108 | 0.5171 |
| TVM+I | 48834.3971 | 1176 | 0.0021 | 0.0011 | 0.0108 | 0.5279 |
| TPM1+I | 49855.9543 | 1171 | 0.0021 | 0.0011 | 0.0108 | 0.5387 |
| F81+I | 49111.2328 | 1172 | 0.0021 | 0.0011 | 0.0108 | 0.5496 |
| TIM1ef+I+G | 49794.0278 | 1173 | 0.0021 | 0.0011 | 0.0108 | 0.5604 |
| SYM | 49889.7210 | 1173 | 0.0021 | 0.0011 | 0.0108 | 0.5712 |
| HKY+G | 48898.5561 | 1173 | 0.0021 | 0.0011 | 0.0108 | 0.5821 |
| TPM1 | 49969.7206 | 1170 | 0.0021 | 0.0011 | 0.0108 | 0.5929 |
| TVMef | 49948.9257 | 1172 | 0.0021 | 0.0011 | 0.0108 | 0.6037 |
| TIM1ef | 49910.5173 | 1171 | 0.0021 | 0.0011 | 0.0108 | 0.6145 |
| JC | 50210.2631 | 1168 | 0.0021 | 0.0011 | 0.0108 | 0.6253 |
| TrNef | 49932.0113 | 1170 | 0.0021 | 0.0011 | 0.0108 | 0.6361 |
| TIM2+I | 48800.4252 | 1175 | 0.0021 | 0.0011 | 0.0108 | 0.6469 |
| TPM1uf+G | 48872.0051 | 1174 | 0.0021 | 0.0011 | 0.0108 | 0.6576 |
| TVM+G | 48851.6599 | 1176 | 0.0021 | 0.0011 | 0.0108 | 0.6684 |
| SYM+I | 49770.6194 | 1174 | 0.0021 | 0.0011 | 0.0108 | 0.6792 |
| TPM2uf+G | 48870.3047 | 1174 | 0.0021 | 0.0011 | 0.0108 | 0.6900 |
| K80+I | 49877.5907 | 1170 | 0.0021 | 0.0011 | 0.0108 | 0.7007 |
| HKY | 48980.3522 | 1172 | 0.0021 | 0.0011 | 0.0108 | 0.7115 |
| GTR+G | 48794.2555 | 1177 | 0.0021 | 0.0011 | 0.0108 | 0.7222 |
| TrNef+I+G | 49815.4431 | 1172 | 0.0021 | 0.0011 | 0.0108 | 0.7330 |
| F81 | 49217.1643 | 1171 | 0.0021 | 0.0011 | 0.0107 | 0.7437 |
| TIM1+G | 48813.8249 | 1175 | 0.0021 | 0.0011 | 0.0107 | 0.7545 |
| TIM2+G | 48812.5564 | 1175 | 0.0021 | 0.0011 | 0.0107 | 0.7652 |
| JC+I+G | 50090.8336 | 1170 | 0.0021 | 0.0011 | 0.0107 | 0.7760 |
| TIM2ef | 49914.1304 | 1171 | 0.0021 | 0.0011 | 0.0107 | 0.7867 |
| TrN+G | 48840.1395 | 1174 | 0.0021 | 0.0011 | 0.0107 | 0.7974 |
| K80+G | 49903.4319 | 1170 | 0.0021 | 0.0011 | 0.0107 | 0.8082 |
| TIM3ef+I | 49798.9305 | 1172 | 0.0021 | 0.0011 | 0.0107 | 0.8189 |
| TPM2 | 49973.3411 | 1170 | 0.0021 | 0.0011 | 0.0107 | 0.8296 |
| TrNef+I | 49820.4936 | 1171 | 0.0021 | 0.0011 | 0.0107 | 0.8403 |
| JC+G | 50122.3885 | 1169 | 0.0021 | 0.0011 | 0.0107 | 0.8510 |
| F81+G | 49132.1321 | 1172 | 0.0021 | 0.0011 | 0.0107 | 0.8617 |
| TPM3+I+G | 49851.7887 | 1172 | 0.0021 | 0.0011 | 0.0107 | 0.8724 |
| TVMef+I+G | 49823.6593 | 1174 | 0.0021 | 0.0011 | 0.0107 | 0.8831 |
| SYM+I+G | 49765.7639 | 1175 | 0.0021 | 0.0011 | 0.0107 | 0.8938 |
| TIM3ef+I+G | 49793.9582 | 1173 | 0.0021 | 0.0011 | 0.0107 | 0.9045 |
| TPM1uf+I | 48856.8677 | 1174 | 0.0021 | 0.0011 | 0.0107 | 0.9152 |
| TPM2+I | 49862.5250 | 1171 | 0.0021 | 0.0011 | 0.0107 | 0.9259 |
| K80+I+G | 49872.6411 | 1171 | 0.0021 | 0.0012 | 0.0107 | 0.9365 |
| TPM2+I+G | 49857.5615 | 1172 | 0.0021 | 0.0012 | 0.0106 | 0.9471 |
| TPM3+I | 49856.3593 | 1171 | 0.0021 | 0.0012 | 0.0106 | 0.9577 |
| TPM1+I+G | 49850.9958 | 1172 | 0.0021 | 0.0012 | 0.0106 | 0.9683 |
| TVMef+I | 49828.9394 | 1173 | 0.0021 | 0.0012 | 0.0106 | 0.9789 |
| TIM1ef+I | 49798.9834 | 1172 | 0.0021 | 0.0012 | 0.0106 | 0.9895 |
| K80 | 49991.3144 | 1169 | 0.0021 | 0.0012 | 0.0105 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| DT: | Akaike Information Criterion |
| delta: | DT difference |
| weight: | DT weight |
| cumWeight: | cumulative DT weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
GTR+I+G TPM2uf+I+G GTR+I TIM1+I+G TPM3uf+I+G TIM2+I+G TIM3+I+G TVM+I+G HKY+I+G F81+I+G TrN+I+G TPM2uf+I TIM3+G TPM3uf+G TIM1+I TIM3+I TIM3ef+G TPM3+G TPM1+G TPM1uf TVMef+G SYM+G TPM2uf TIM2 TIM1ef+G TIM1 TPM3uf+I TrN TVM TIM3 GTR TPM3uf TIM2ef+I+G TrNef+G JC+I TPM1uf+I+G HKY+I TIM3ef TIM2ef+G TPM2+G TIM2ef+I TPM3 TrN+I TVM+I TPM1+I F81+I TIM1ef+I+G SYM HKY+G TPM1 TVMef TIM1ef JC TrNef TIM2+I TPM1uf+G TVM+G SYM+I TPM2uf+G K80+I HKY GTR+G TrNef+I+G F81 TIM1+G TIM2+G JC+I+G TIM2ef TrN+G K80+G TIM3ef+I TPM2 TrNef+I JC+G F81+G TPM3+I+G TVMef+I+G SYM+I+G TIM3ef+I+G TPM1uf+I TPM2+I K80+I+G TPM2+I+G TPM3+I TPM1+I+G TVMef+I TIM1ef+I K80
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (GTR+I+G) selected by DT
with jModeltest 2.1.10 v20160303 on Fri Apr 17 22:49:22 PDT 2020]
BEGIN PAUP;
Lset base=(0.2999 0.1803 0.1945 ) nst=6 rmat=(0.3197 1.1906 0.2209 0.2859 3.3016) rates=gamma shape=1.5270 ncat=4 pinvar=0.8070;
END;
--
Model Averaged Phylogeny
| Selection criterion | DT |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |







